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copick
/
voxel-counts-per-label
/ 0.1.1
Voxel Counts per Label
A solution that counts the number of voxels per label in a segmentation and saves the results as a CSV and HTML page.
Tags
imaging
cryoet
Python
napari
Solution written by
Kyle Harrington
License of solution
MIT
Source Code
View on GitHub
Arguments
--copick_config_path
Path to the Copick configuration JSON file. (default value: PARAMETER_VALUE)
--session_id
Session ID for the segmentation. (default value: PARAMETER_VALUE)
--user_id
User ID for segmentation creation. (default value: PARAMETER_VALUE)
--segmentation_name
Name of the segmentation to process. (default value: PARAMETER_VALUE)
--output_csv
Output path for the CSV file. (default value: PARAMETER_VALUE)
--output_html
Output path for the HTML file. (default value: PARAMETER_VALUE)
Usage instructions
Please follow
this link
for details on how to install and run this solution.