copick / voxel-counts-per-label / 0.1.1

Voxel Counts per Label

A solution that counts the number of voxels per label in a segmentation and saves the results as a CSV and HTML page.
Tags
imagingcryoetPythonnapari
Solution written by
Kyle Harrington
License of solution
MIT
Source Code

Arguments

--copick_config_path
Path to the Copick configuration JSON file. (default value: PARAMETER_VALUE)
--session_id
Session ID for the segmentation. (default value: PARAMETER_VALUE)
--user_id
User ID for segmentation creation. (default value: PARAMETER_VALUE)
--segmentation_name
Name of the segmentation to process. (default value: PARAMETER_VALUE)
--output_csv
Output path for the CSV file. (default value: PARAMETER_VALUE)
--output_html
Output path for the HTML file. (default value: PARAMETER_VALUE)

Usage instructions

Please follow this link for details on how to install and run this solution.