Voxel Counts per Label

A solution that counts the number of voxels per label in a segmentation and saves the results as a CSV and HTML page.

Arguments

--copick_config_path

Path to the Copick configuration JSON file. (default value: PARAMETER_VALUE)

--session_id

Session ID for the segmentation. (default value: PARAMETER_VALUE)

--user_id

User ID for segmentation creation. (default value: PARAMETER_VALUE)

--segmentation_name

Name of the segmentation to process. (default value: PARAMETER_VALUE)

--output_csv

Output path for the CSV file. (default value: PARAMETER_VALUE)

--output_html

Output path for the HTML file. (default value: PARAMETER_VALUE)

Please follow this link for details on how to install and run this solution.