copick / score-all-picks / 0.0.3

Evaluate Picks Against Multilabel Segmentation

A solution that evaluates picks from a Copick project against a multilabel segmentation and computes metrics for each (user_id, session_id) pair for each run and across all runs.

Arguments

--copick_config_path

Path to the Copick configuration JSON file. (default value: PARAMETER_VALUE)

--painting_segmentation_name

Name of the painting segmentation. (default value: PARAMETER_VALUE)

--voxel_spacing

Voxel spacing used to scale pick locations. (default value: PARAMETER_VALUE)

--segmentation_idx_offset

Offset for segmentation indices (default 0). (default value: 0)

--output_stats_dir

Directory to save output statistics. (default value: PARAMETER_VALUE)

Usage instructions

Please follow this link for details on how to install and run this solution.