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copick
/
project_from_dataportal
/ 0.1.11
Fetch Zarr and Annotations from Data Portal and Integrate with Copick
Fetches Zarr files, annotations, and points from cryoet_data_portal and integrates them into the specified Copick project.
Tags
imaging
cryoet
Citation
Cellcanvas and Copick teams
https://cellcanvas.org
Solution written by
Kyle Harrington
License of solution
MIT
Source Code
View on GitHub
Arguments
--dataset_id
Dataset ID to process. (default value: PARAMETER_VALUE)
--copick_config_path
Path to the Copick configuration file. (default value: PARAMETER_VALUE)
--voxel_spacing
Optional voxel spacing to filter tomograms. (default value: PARAMETER_VALUE)
--overlay_root
Path to the overlay root directory. (default value: PARAMETER_VALUE)
--static_root
Path to the static root directory. (default value: PARAMETER_VALUE)
Usage instructions
Please follow
this link
for details on how to install and run this solution.