copick / grid-picks / 0.0.3

Grid Picks from Tomogram

A solution that places a grid of picks based on the radius of each pickable object, parameterized by a multiple of the particle radius, using tomogram shape.

Arguments

--copick_config_path

Path to the Copick configuration JSON file. (default value: PARAMETER_VALUE)

--grid_spacing_factor

Factor to multiply the particle radius by to determine grid spacing. (default value: PARAMETER_VALUE)

--run_name

Name of the Copick run to process. If not specified, process all runs. (default value: PARAMETER_VALUE)

--tomo_type

Type of tomogram to process. (default value: PARAMETER_VALUE)

--voxel_spacing

Voxel spacing to be used. (default value: PARAMETER_VALUE)

--session_id

Session ID for the segmentation. (default value: PARAMETER_VALUE)

--user_id

User ID for segmentation creation. (default value: PARAMETER_VALUE)

Usage instructions

Please follow this link for details on how to install and run this solution.