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copick / get-pick-embeddings / 0.2.0

Analyze Picks and Corresponding Embeddings for a Single Run

Generates a DataFrame from picks and their corresponding embeddings for a single run and saves it.
Tags
imagingcryoetPythonnapari
Solution written by
Kyle Harrington
License of solution
MIT
Source Code
View on GitHub

Arguments

--copick_config_path
Path to the Copick configuration JSON file. (default value: PARAMETER_VALUE)
--run_name
Name of the run to process. (default value: PARAMETER_VALUE)
--feature_types
Comma-separated list of feature types to extract embeddings for. (default value: PARAMETER_VALUE)
--dataframe_path
Path for the output dataframe. (default value: PARAMETER_VALUE)

Usage instructions

Please follow this link for details on how to install and run this solution.