AboutSolution CatalogDocumentationTutorial
cellcanvas album catalog
sharing cellcanvas tools
copick / get-pick-embeddings / 0.1.0

Analyze Picks and Corresponding Embeddings for a Single Run

Generates a DataFrame from picks and their corresponding embeddings for a single run and saves it.
Tags
imagingcryoetPythonnapari
Solution written by
Kyle Harrington
License of solution
MIT
Source Code
View on GitHub

Arguments

--embedding_directories
Path to the embedding Zarr directories separated by commas. (default value: PARAMETER_VALUE)
--picks_directory
Directory containing all the pick files. (default value: PARAMETER_VALUE)
--dataframe_path
Path for the output dataframe. (default value: PARAMETER_VALUE)

Usage instructions

Please follow this link for details on how to install and run this solution.