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copick
/
export-to-hdf
/ 0.0.1
Export Copick Runs to HDF5
A solution that exports multiple Copick runs' tomograms and picks into an HDF5 file.
Tags
imaging
cryoet
Python
Solution written by
Kyle Harrington
License of solution
MIT
Source Code
View on GitHub
Arguments
--copick_config_path
Path to the Copick configuration JSON file. (default value: PARAMETER_VALUE)
--run_names
Comma-separated list of Copick run names to process. (default value: PARAMETER_VALUE)
--output_hdf_path
Path to the output HDF5 file. (default value: PARAMETER_VALUE)
Usage instructions
Please follow
this link
for details on how to install and run this solution.