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Classify and Match Embeddings to Known Particle Classes
Compares median embeddings from a Zarr dataset to known class medians and identifies matches based on distance thresholds.
Tags
imaging
cryoet
Python
napari
Solution written by
Kyle Harrington
License of solution
MIT
Source Code
View on GitHub
Arguments
--embedding_directory
Path to the embedding Zarr directory. (default value: PARAMETER_VALUE)
--median_embeddings_path
Path to the CSV file with median embeddings and distances. (default value: PARAMETER_VALUE)
--matches_output_path
Path for the output file containing matches. (default value: PARAMETER_VALUE)
Usage instructions
Please follow
this link
for details on how to install and run this solution.