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copick / compare-picks / 0.0.11

Compare Picks from Different Users and Sessions

A solution that compares the picks from a reference user and session to a candidate user and session for all particle types, providing metrics like average distance, precision, recall, and F1 score.
Tags
imagingcryoetPython
Solution written by
Kyle Harrington
License of solution
MIT
Source Code
View on GitHub

Arguments

--copick_config_path
Path to the Copick configuration JSON file. (default value: PARAMETER_VALUE)
--reference_user_id
User ID for the reference picks. (default value: PARAMETER_VALUE)
--reference_session_id
Session ID for the reference picks. (default value: PARAMETER_VALUE)
--candidate_user_id
User ID for the candidate picks. (default value: PARAMETER_VALUE)
--candidate_session_id
Session ID for the candidate picks. (default value: PARAMETER_VALUE)
--distance_threshold
Distance threshold for matching points in Angstrom. (default value: PARAMETER_VALUE)
--run_name
Name of the Copick run to process. (default value: PARAMETER_VALUE)

Usage instructions

Please follow this link for details on how to install and run this solution.