Segmentation using Random Forest on Embeddings in Chunks

Apply a Random Forest model to embeddings generated by TomoTwin to produce segmentation output, processing in chunks.

Arguments

--zarrembedding

Path to the input Zarr file containing embeddings (default value: PARAMETER_VALUE)

--zarroutput

Path for the output Zarr file containing segmentation (default value: PARAMETER_VALUE)

--modelpath

Path to the joblib file containing the trained Random Forest model (default value: PARAMETER_VALUE)

Please follow this link for details on how to install and run this solution.